Annotated protein: | Large ribosomal subunit protein uL6 (60S ribosomal protein L9). Gene symbol: RPL9. Taxonomy: Mus musculus (Mouse). Uniprot ID: P51410 |
antibody wiki: | |
SynGO gene info: | SynGO data @ RPL9 |
Ontology domain: | Cellular Component |
SynGO term: | presynaptic ribosome |
Annotated paper: | Trinidad JC, et al. "Comprehensive identification of phosphorylation sites in postsynaptic density preparations" Mol Cell Proteomics. 2006 May;5(5):914-22 PMID:16452087 |
Figure(s): | Suppl. Table S1 |
Annotation description: | 18/5/2018 Pim rule: NAS_CPLX_1 rationale: Ribosomes are present in the axonal compartment (Fig.1, RL22 used as marker protein using the RiboTag mouse line; electron and fluorescence microscopy) and protein translation is shown to occur in this compartment (PMID:27321671). RL9 is a generally accepted constituent of the ribosome. No functions of RL9 are known independent from the ribosomal complex. Inference to term "ribosome (GO:0005840)" part_of "presynapse (GO:0098793)" is trivial. C_ref CC: SynGO ID #1681 ("presynaptic ribosome") P_inf CC: SynGO ID #635 Complex membership: RL9 protein is a fixed member of the 60S ribosomal subunit complex. - Shown in crystal structure (PMID:28138070, Fig.1, name:ul6) - GO annotations to "structural constituent of ribosome (GO:0003735)" (ISO and IEA) |
Evidence tracking, Biological System: | |
Evidence tracking, Protein Targeting: | |
Evidence tracking, Experiment Assay: | |
Non-tracable Author Statement (NAS): | This annotation required some inference over additional information/literature, and is not solely based on observations made in the annotated paper by its original authors. |
Annotator(s): | Daniela Dieterich (ORCID:0000-0002-9880-1214) Rainer Pielot (ORCID:0000-0002-9681-3318) Karl-Heinz Smalla (ORCID:0000-0002-0269-0311) Eckart Gundelfinger (ORCID:0000-0001-9377-7414) |
Lab: | Leibniz Institute for Neurobiology (LIN), Institute of Pharmacology and Toxicology, Otto von Guericke University, Center for Behavioral Brain Sciences (CBBS), Magdeburg, Germany |
Additional literature: | Ribosomes are present in the axonal compartment (Fig.1, RL22 used as marker protein using the RiboTag mouse line; electron and fluorescence microscopy) and protein translation is shown to occur in this compartment. @ PMID:27321671 |
SynGO annotation ID: | 3545 |
Dataset release (version): | 20231201 |
View annotation as GO-CAM model: |