Annotated protein:protein-tyrosine-phosphatase (EC 3.1.3.48). Gene symbol: PTPRD. Taxonomy: Rattus norvegicus (Rat). Uniprot ID: M0RB22
antibody wiki:
SynGO gene info:SynGO data @ PTPRD
Ontology domain:Biological Process
SynGO term:synapse adhesion between pre- and post-synapse (GO:0099560)
Synapse type(s):hippocampus
Annotated paper:Choi Y, et al. "SALM5 trans-synaptically interacts with LAR-RPTPs in a splicing-dependent manner to regulate synapse development" Sci Rep. 2016 May 26;6:26676 PMID:27225731
Figure(s):fig 4, 5
Annotation description:Splice inserts in the Ig domains of LAR, PTPδ, and PTPσ differentially regulate SALM5 binding.
LAR-RPTPs mediate SALM5-dependent presynaptic differentiation.
Evidence tracking, Biological System:Cultured neurons
Non-neuronal tissue
Evidence tracking, Protein Targeting:Over-expression
Antibody (detection)
Evidence tracking, Experiment Assay:Confocal
Annotator(s):Hwajin Jung (ORCID:0000-0001-6194-9648)
Eunjoon Kim (ORCID:0000-0001-5518-6584)
Lab:Center for Synaptic Brain Dysfunctions, Institute for Basic Science (IBS) and Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, South Korea
SynGO annotation ID:2473
Dataset release (version):20231201
View annotation as GO-CAM model:Gene Ontology